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KMOS Pipeline Reference Manual
1.0.8
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00001 /* $Id: kmo_multi_reconstruct.c,v 1.24 2013/01/24 00:19:57 aagudo Exp $ 00002 * 00003 * This file is part of the KMOS Pipeline 00004 * Copyright (C) 2002,2003 European Southern Observatory 00005 * 00006 * This program is free software; you can redistribute it and/or modify 00007 * it under the terms of the GNU General Public License as published by 00008 * the Free Software Foundation; either version 2 of the License, or 00009 * (at your option) any later version. 00010 * 00011 * This program is distributed in the hope that it will be useful, 00012 * but WITHOUT ANY WARRANTY; without even the implied warranty of 00013 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 00014 * GNU General Public License for more details. 00015 * 00016 * You should have received a copy of the GNU General Public License 00017 * along with this program; if not, write to the Free Software 00018 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00019 */ 00020 00021 /* 00022 * $Author: aagudo $ 00023 * $Date: 2013/01/24 00:19:57 $ 00024 * $Revision: 1.24 $ 00025 * $Name: kmosp_v1_0_8__20130220 $ 00026 */ 00027 00028 #ifdef HAVE_CONFIG_H 00029 #include <config.h> 00030 #endif 00031 00032 #include <string.h> 00033 #include <math.h> 00034 00035 #include <cpl.h> 00036 #include <cpl_wcs.h> 00037 00038 #include "kmo_debug.h" 00039 #include "kmo_utils.h" 00040 #include "kmo_dfs.h" 00041 #include "kmo_error.h" 00042 #include "kmo_priv_functions.h" 00043 #include "kmo_cpl_extensions.h" 00044 #include "kmo_constants.h" 00045 #include "kmo_priv_multi_reconstruct.h" 00046 #include "kmo_priv_reconstruct.h" 00047 00048 static int kmo_multi_reconstruct_create(cpl_plugin *); 00049 static int kmo_multi_reconstruct_exec(cpl_plugin *); 00050 static int kmo_multi_reconstruct_destroy(cpl_plugin *); 00051 static int kmo_multi_reconstruct(cpl_parameterlist *, cpl_frameset *); 00052 00053 static char kmo_multi_reconstruct_description[] = 00054 "This recipe shifts several exposures of an object and combines them. The diffe-\n" 00055 "rent methods to match the exposures are described below (--smethod parameter).\n" 00056 "The output cube is larger than the input cubes, according to the shifts to be\n" 00057 "applied. Additionally a border of NaN values is added. The WCS is the same as\n" 00058 "for the first exposure.\n" 00059 "For each spatial/spectral pixel a new value will be calculated (according the\n" 00060 "--cmethod parameter) and written into the output cube.\n" 00061 "Only exposures with equal orientation regarding the WCS can be combined (except\n" 00062 "-–smethod=”none”), north must point to the same direction. It is recommended to\n" 00063 "apply any rotation possibly after combining.\n" 00064 "The default mapping mode is done via the --name parameter, where the name of\n" 00065 "the object has to be provided. The recipe searches in all input data cubes IFUs\n" 00066 "pointing to that object.\n" 00067 "\n" 00068 "BASIC PARAMETERS:\n" 00069 "-----------------\n" 00070 "--name\n" 00071 "--ifus\n" 00072 "Since an object can be present only once per exposure and since it can be\n" 00073 "located in different IFUs for the existing exposures, there are two modes to\n" 00074 "identify the objects:\n" 00075 " * Combine by object names (default)\n" 00076 " In this case the object name must be provided via the --name parameter. The\n" 00077 " object name will be searched for in all primary headers of all provided frames\n" 00078 " in the keyword ESO OCS ARMx NAME.\n" 00079 "\n" 00080 " * Combine by index (advanced)\n" 00081 " In this case the --ifus parameter must be provided. The parameter must have\n" 00082 " the same number of entries as frames are provided, e.g. \"3;1;24\" for 3 expo-\n" 00083 " sures. The index doesn't reference the extension in the frame but the real\n" 00084 " index of the IFU as defined in the EXTNAME keyword (e.g. 'IFU.3.DATA').\n" 00085 "\n" 00086 "--smethod\n" 00087 "There are following sources to get the shift parameters from:\n" 00088 " * 'none' (default)\n" 00089 " The cubes are directly recombined, not shifting at all. The ouput frame will\n" 00090 " have the same dimensions as the input cubes.\n" 00091 " If the size differs a warning will be emitted and the cubes will be aligned\n" 00092 " to the lower left corner. If the orientation differs a warning will be emit-\n" 00093 " ted, but the cubes are combined anyway.\n" 00094 "\n" 00095 " * 'header'\n" 00096 " The shifts are calculated according to the WCS information stored in the\n" 00097 " header of every IFU. The output frame will get larger, except the object is\n" 00098 " at the exact same position for all exposures. The size of the exposures can\n" 00099 " differ, but the orientation must be the same for all exposures.\n" 00100 "\n" 00101 " * 'user'\n" 00102 " Read the shifts from a user specified file. The path of the file must be pro-\n" 00103 " vided using the --filename parameter. For every exposure (except the first one)\n" 00104 " two shift values are expected per line, they have to be separated with simple\n" 00105 " spaces. The values indicate pixel shifts and are referenced to the first\n" 00106 " frame. The 1st value is the shift in x-direction to the left, the 2nd the\n" 00107 " shift in y-direction upwards. The size of the exposures can differ, but the\n" 00108 " orientation must be the same for all exposures.\n" 00109 "\n" 00110 " * 'center'\n" 00111 " The shifts are calculated using a centering algorithm. The detector exposures\"" 00112 " will be reconstructed and the resulting data cubes will be collapsed to an image.\n" 00113 " A 2D profile of the image will be fitted to it to identify the centre. With \n" 00114 " the parameter --fmethod the function to fit can be provided. The size of the\n" 00115 " exposures can differ, but the orientation must be the same for all exposures.\n" 00116 "\n" 00117 "--fmethod\n" 00118 "The type of function that should be fitted spatially to the collapsed image.\n" 00119 "This fit is used to create a mask to extract the spectrum of the object. Valid\n" 00120 "values are “gauss” and “moffat”.\n" 00121 "\n" 00122 "ADVANCED PARAMETERS\n" 00123 "-------------------\n" 00124 "--b_samples\n" 00125 "The number of samples in spectral direction for the reconstructed cube. Ideal-\n" 00126 "ly this number should be greater than 2048, the detector size.\n" 00127 "\n" 00128 "--b_start\n" 00129 "--b_end\n" 00130 "Used to define manually the start and end wavelength for the reconstructed\n" 00131 "cube. By default the internally defined values are used.\n" 00132 "\n" 00133 "-------------------------------------------------------------------------------\n" 00134 " Input files:\n" 00135 "\n" 00136 " DO DO KMOS \n" 00137 " category group Type Explanation Required #Frames\n" 00138 " -------- ----- ----- ----------- -------- -------\n" 00139 " OBJECT or RAW The science frames Y >=2 \n" 00140 " STD RAW \n" 00141 " XCAL F2D x calibration frame Y 1 \n" 00142 " YCAL F2D y calibration frame Y 1 \n" 00143 " LCAL F2D Wavelength calib. frame Y 1 \n" 00144 " WAVE_BAND F2L Table with start-/end-wavelengths Y 1 \n" 00145 "\n" 00146 " Output files:\n" 00147 "\n" 00148 " DO KMOS\n" 00149 " category Type Explanation\n" 00150 " -------- ----- -----------\n" 00151 " SCI_COMBINED F3I Combined cubes with noise\n" 00152 " SCI_RECONSTRUCTED F3I Reconstructed cube with noise\n" 00153 00154 00155 00156 " <none or any> - F3I data frame Y 2-n \n" 00157 " WAVE_BAND F2L Table with start-/end-wavelengths Y 1 \n" 00158 "\n" 00159 " Output files:\n" 00160 "\n" 00161 " DO KMOS\n" 00162 " category Type Explanation\n" 00163 " -------- ----- -----------\n" 00164 " CUBE_MULTI_<name/ifu> F3I Combined data cube\n" 00165 "-------------------------------------------------------------------------------\n" 00166 "\n"; 00167 00184 int cpl_plugin_get_info(cpl_pluginlist *list) 00185 { 00186 cpl_recipe *recipe = cpl_calloc(1, sizeof *recipe); 00187 cpl_plugin *plugin = &recipe->interface; 00188 00189 cpl_plugin_init(plugin, 00190 CPL_PLUGIN_API, 00191 KMOS_BINARY_VERSION, 00192 CPL_PLUGIN_TYPE_RECIPE, 00193 "kmo_multi_reconstruct", 00194 "Combine reconstructed cubes", 00195 kmo_multi_reconstruct_description, 00196 "Alex Agudo Berbel", 00197 "agudo@mpe.mpg.de", 00198 kmos_get_license(), 00199 kmo_multi_reconstruct_create, 00200 kmo_multi_reconstruct_exec, 00201 kmo_multi_reconstruct_destroy); 00202 00203 cpl_pluginlist_append(list, plugin); 00204 00205 return 0; 00206 } 00207 00215 static int kmo_multi_reconstruct_create(cpl_plugin *plugin) 00216 { 00217 cpl_recipe *recipe; 00218 cpl_parameter *p; 00219 00220 /* Check that the plugin is part of a valid recipe */ 00221 if (cpl_plugin_get_type(plugin) == CPL_PLUGIN_TYPE_RECIPE) 00222 recipe = (cpl_recipe *)plugin; 00223 else 00224 return -1; 00225 00226 /* Create the parameters list in the cpl_recipe object */ 00227 recipe->parameters = cpl_parameterlist_new(); 00228 00229 /* Fill the parameters list */ 00230 /* --name */ 00231 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.name", 00232 CPL_TYPE_STRING, 00233 "Name of the object to combine.", 00234 "kmos.kmo_multi_reconstruct", 00235 ""); 00236 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "name"); 00237 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00238 cpl_parameterlist_append(recipe->parameters, p); 00239 00240 /* --ifus */ 00241 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.ifus", 00242 CPL_TYPE_STRING, 00243 "The indices of the IFUs to combine. " 00244 "\"ifu1;ifu2;...\"", 00245 "kmos.kmo_multi_reconstruct", 00246 ""); 00247 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "ifus"); 00248 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00249 cpl_parameterlist_append(recipe->parameters, p); 00250 00251 /* --size */ 00252 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.size", 00253 CPL_TYPE_STRING, 00254 "Spatial size of the output cube.", 00255 "kmos.kmo_multi_reconstruct", 00256 "max"); 00257 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "size"); 00258 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00259 cpl_parameterlist_append(recipe->parameters, p); 00260 00261 00262 /* --smethod shift method*/ 00263 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.smethod", 00264 CPL_TYPE_STRING, 00265 "The shifting method: " 00266 "'none': no shifting, combined directly " 00267 "(default), " 00268 "'header': shift according to WCS, " 00269 "'center': centering algorithm, " 00270 "'user': read shifts from file", 00271 "kmos.kmo_multi_reconstruct", 00272 "none"); 00273 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "smethod"); 00274 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00275 cpl_parameterlist_append(recipe->parameters, p); 00276 00277 /* --fmethod */ 00278 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.fmethod", 00279 CPL_TYPE_STRING, 00280 "The fitting method (applies only when " 00281 "method='center'): " 00282 "'gauss': fit a gauss function to collapsed " 00283 "image (default), " 00284 "'moffat': fit a moffat function to collapsed" 00285 " image", 00286 "kmos.kmo_combine", 00287 "gauss"); 00288 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "fmethod"); 00289 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00290 cpl_parameterlist_append(recipe->parameters, p); 00291 00292 /* --imethod interpolation method */ 00293 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.imethod", 00294 CPL_TYPE_STRING, 00295 "Method to use for interpolation. " 00296 "[\"NN\" (nearest neighbour), " 00297 "\"lwNN\" (linear weighted nearest neighbor), " 00298 "\"swNN\" (square weighted nearest neighbor), " 00299 "\"MS\" (Modified Shepard's method)" 00300 "\"CS\" (Cubic spline)]", 00301 "kmos.kmo_multi_reconstruct", 00302 "NN"); 00303 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "imethod"); 00304 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00305 cpl_parameterlist_append(recipe->parameters, p); 00306 00307 /* --neighborhoodRange */ 00308 p = cpl_parameter_new_value("kmos.kmo_reconstruct.neighborhoodRange", 00309 CPL_TYPE_DOUBLE, 00310 "Defines the range to search for neighbors. " 00311 "in pixels", 00312 "kmos.kmo_reconstruct", 00313 1.001); 00314 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "neighborhoodRange"); 00315 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00316 cpl_parameterlist_append(recipe->parameters, p); 00317 00318 /* --filename */ 00319 p = cpl_parameter_new_value("kmos.kmo_multi_reconstruct.filename", 00320 CPL_TYPE_STRING, 00321 "The path to the file with the shift vectors." 00322 "(Applies only to smethod='user')", 00323 "kmos.kmo_multi_reconstruct", 00324 ""); 00325 cpl_parameter_set_alias(p, CPL_PARAMETER_MODE_CLI, "filename"); 00326 cpl_parameter_disable(p, CPL_PARAMETER_MODE_ENV); 00327 cpl_parameterlist_append(recipe->parameters, p); 00328 00329 // add parameters for band-definition 00330 kmo_band_pars_create(recipe->parameters, 00331 "kmos.kmo_multi_reconstruct"); 00332 00333 return kmo_combine_pars_create(recipe->parameters, 00334 "kmos.kmo_multi_reconstruct", 00335 DEF_REJ_METHOD, 00336 FALSE); 00337 } 00338 00344 static int kmo_multi_reconstruct_exec(cpl_plugin *plugin) 00345 { 00346 cpl_recipe *recipe; 00347 00348 /* Get the recipe out of the plugin */ 00349 if (cpl_plugin_get_type(plugin) == CPL_PLUGIN_TYPE_RECIPE) 00350 recipe = (cpl_recipe *)plugin; 00351 else return -1 ; 00352 00353 return kmo_multi_reconstruct(recipe->parameters, recipe->frames); 00354 } 00355 00361 static int kmo_multi_reconstruct_destroy(cpl_plugin *plugin) 00362 { 00363 cpl_recipe *recipe; 00364 00365 /* Get the recipe out of the plugin */ 00366 if (cpl_plugin_get_type(plugin) == CPL_PLUGIN_TYPE_RECIPE) 00367 recipe = (cpl_recipe *)plugin; 00368 else return -1 ; 00369 00370 cpl_parameterlist_delete(recipe->parameters); 00371 return 0 ; 00372 } 00373 00374 //int kmo_tolerance_round(double x, double tol) 00375 //{ 00376 // int ret = 0; 00377 00378 // KMO_TRY 00379 // { 00380 // if (fabs(x - floor(x)) < tol) { 00381 // // value is slightly greater than the real int value 00382 // ret = floor(x); 00383 // } else { 00384 // if (fabs(x - floor(x+tol)) < tol) { 00385 // // value is slightly greater than the real int value 00386 // ret = floor(x+tol); 00387 // } else { 00388 // // error: sub pixel shift 00389 // KMO_TRY_ASSURE(1 == 0, 00390 // CPL_ERROR_ILLEGAL_INPUT, 00391 // "Please apply only whole pixel shifts here " 00392 // "and no subpixel shifts!"); 00393 // } 00394 // } 00395 // } 00396 // KMO_CATCH 00397 // { 00398 // KMO_CATCH_MSG(); 00399 00400 // ret = 0; 00401 // } 00402 00403 // return ret; 00404 //} 00405 00420 static int kmo_multi_reconstruct(cpl_parameterlist *parlist, cpl_frameset *frameset) 00421 { 00422 const char *smethod = NULL, 00423 *cmethod = NULL, 00424 *fmethod = NULL, 00425 *imethod = NULL, 00426 *filename = NULL, 00427 *ifus_txt = NULL, 00428 *name = NULL, 00429 *size = NULL, 00430 *filter_id = NULL; 00431 00432 char *tmp_str = NULL, 00433 *filename_output_cube = NULL, 00434 *extname = NULL, 00435 *keyword = NULL, 00436 *tmp_ocs = NULL; 00437 00438 cpl_imagelist **data_cube_list = NULL, 00439 **noise_cube_list = NULL, 00440 *cube_combined_data = NULL, 00441 *cube_combined_noise = NULL; 00442 00443 cpl_vector *ifus = NULL; 00444 00445 int ret_val = 0, 00446 nr_exposures = 0, 00447 device_nr = 0, 00448 citer = 0, 00449 cmin = 0, 00450 cmax = 0, 00451 nr_alloc = 0; 00452 00453 double neighborhoodRange = 1.001, 00454 cpos_rej = 0.0, 00455 cneg_rej = 0.0; 00456 00457 char **exposure_filename = NULL, 00458 **exposure_objectname = NULL; 00459 int *exposure_ifus = NULL, 00460 nr_object_frames = 0, 00461 nr_std_frames = 0; 00462 00463 double *xshifts = NULL, 00464 *yshifts = NULL, 00465 cd1_1 = 0.0, 00466 cd1_2 = 0.0, 00467 ang1 = 0.0, 00468 ang2 = 0.0, 00469 exposure_rotangle = 0.0; 00470 00471 cpl_propertylist *pl = NULL, 00472 *main_header = NULL, 00473 *ref_main_header = NULL, 00474 *ref_sub_header = NULL, 00475 *tmp_header = NULL, 00476 **header_data = NULL, 00477 **data_header_list = NULL, 00478 **noise_header_list = NULL; 00479 00480 cpl_frame *frame = NULL, 00481 *lcal_frame = NULL; 00482 00483 cpl_table *band_table = NULL; 00484 00485 cpl_image *lcalImg = NULL; 00486 00487 main_fits_desc desc; 00488 00489 cpl_frameset *exposures = NULL; 00490 00491 cpl_frame **empty_frames = NULL, 00492 *tmp_frame = NULL, 00493 *ref_frame = NULL; 00494 00495 gridDefinition gd; 00496 00497 KMO_TRY 00498 { 00499 /* --- check input --- */ 00500 KMO_TRY_ASSURE((parlist != NULL) && 00501 (frameset != NULL), 00502 CPL_ERROR_NULL_INPUT, 00503 "Not all input data is provided!"); 00504 00505 KMO_TRY_ASSURE(kmo_dfs_set_groups(frameset, "kmo_multi_reconstruct") == 1, 00506 CPL_ERROR_ILLEGAL_INPUT, 00507 "Cannot identify RAW and CALIB frames!"); 00508 00509 KMO_TRY_ASSURE(! ((cpl_frameset_count_tags(frameset, XCAL) == 0) && 00510 (cpl_frameset_count_tags(frameset, YCAL) == 0) && 00511 (cpl_frameset_count_tags(frameset, LCAL) == 0) && 00512 (cpl_frameset_count_tags(frameset, WAVE_BAND) == 0)), 00513 CPL_ERROR_FILE_NOT_FOUND, 00514 "XCAL, YCAL, LCAL or WAVE_BAND frames missing in " 00515 "frameset!!"); 00516 00517 KMO_TRY_ASSURE(cpl_frameset_count_tags(frameset, XCAL) == 1, 00518 CPL_ERROR_FILE_NOT_FOUND, 00519 "Exactly one XCAL frame is expected in frameset!"); 00520 00521 KMO_TRY_ASSURE(cpl_frameset_count_tags(frameset, YCAL) == 1, 00522 CPL_ERROR_FILE_NOT_FOUND, 00523 "Exactly one YCAL frame is expected in frameset!"); 00524 00525 KMO_TRY_ASSURE(cpl_frameset_count_tags(frameset, LCAL) == 1, 00526 CPL_ERROR_FILE_NOT_FOUND, 00527 "Exactly one LCAL frame is expected in frameset!"); 00528 00529 KMO_TRY_ASSURE(cpl_frameset_count_tags(frameset, WAVE_BAND) == 1, 00530 CPL_ERROR_FILE_NOT_FOUND, 00531 "Exactly one WAVE_BAND frame is expected in frameset!"); 00532 00533 // assert that at least two OBJECT or STD frames are available and create 00534 // intermediate frameset just with these science frames 00535 nr_object_frames = cpl_frameset_count_tags(frameset, OBJECT); 00536 nr_std_frames = cpl_frameset_count_tags(frameset, STD); 00537 KMO_TRY_CHECK_ERROR_STATE(); 00538 nr_exposures = nr_object_frames + nr_std_frames; 00539 00540 KMO_TRY_ASSURE(((nr_object_frames > 1) && (nr_std_frames == 0)) || 00541 ((nr_object_frames == 0) && (nr_std_frames > 1)), 00542 CPL_ERROR_ILLEGAL_INPUT, 00543 "OBJECT and STD frames mustn't be intermixed and at " 00544 "least two frames (OBJECT or STD) must be provided " 00545 "to combine!"); 00546 KMO_TRY_EXIT_IF_NULL( 00547 exposures = cpl_frameset_new()); 00548 if (nr_object_frames > 1) { 00549 KMO_TRY_EXIT_IF_NULL( 00550 tmp_frame = kmo_dfs_get_frame(frameset, OBJECT)); 00551 } else { 00552 KMO_TRY_EXIT_IF_NULL( 00553 tmp_frame = kmo_dfs_get_frame(frameset, STD)); 00554 } 00555 00556 for (int i = 0; i < nr_exposures; i++) { 00557 KMO_TRY_EXIT_IF_ERROR( 00558 cpl_frameset_insert(exposures, cpl_frame_duplicate(tmp_frame))); 00559 KMO_TRY_CHECK_ERROR_STATE(); 00560 00561 tmp_frame = kmo_dfs_get_frame(frameset, NULL); 00562 } 00563 00564 cpl_msg_info("", "--- Parameter setup for kmo_multi_reconstruct -------"); 00565 00566 KMO_TRY_EXIT_IF_NULL( 00567 imethod = kmo_dfs_get_parameter_string(parlist, 00568 "kmos.kmo_multi_reconstruct.imethod")); 00569 00570 KMO_TRY_ASSURE((strcmp(imethod, "NN") == 0) || 00571 (strcmp(imethod, "lwNN") == 0) || 00572 (strcmp(imethod, "swNN") == 0) || 00573 (strcmp(imethod, "MS") == 0) || 00574 (strcmp(imethod, "CS") == 0), 00575 CPL_ERROR_ILLEGAL_INPUT, 00576 "imethod must be either \"NN\", \"lwNN\", " 00577 "\"swNN\", \"MS\" or \"CS\"!"); 00578 00579 KMO_TRY_EXIT_IF_ERROR( 00580 kmo_dfs_print_parameter_help(parlist, 00581 "kmos.kmo_multi_reconstruct.imethod")); 00582 00583 neighborhoodRange = kmo_dfs_get_parameter_double(parlist, 00584 "kmos.kmo_reconstruct.neighborhoodRange"); 00585 KMO_TRY_CHECK_ERROR_STATE(); 00586 00587 KMO_TRY_ASSURE(neighborhoodRange > 0.0, 00588 CPL_ERROR_ILLEGAL_INPUT, 00589 "neighborhoodRange must be greater than 0.0"); 00590 00591 KMO_TRY_EXIT_IF_ERROR( 00592 kmo_dfs_print_parameter_help(parlist, 00593 "kmos.kmo_reconstruct.neighborhoodRange")); 00594 00595 KMO_TRY_EXIT_IF_NULL( 00596 size = kmo_dfs_get_parameter_string(parlist, 00597 "kmos.kmo_multi_reconstruct.size")); 00598 00599 KMO_TRY_EXIT_IF_NULL( 00600 smethod = kmo_dfs_get_parameter_string(parlist, 00601 "kmos.kmo_multi_reconstruct.smethod")); 00602 00603 KMO_TRY_EXIT_IF_NULL( 00604 fmethod = kmo_dfs_get_parameter_string(parlist, 00605 "kmos.kmo_multi_reconstruct.fmethod")); 00606 00607 KMO_TRY_ASSURE((strcmp(size, "max") == 0) || 00608 (strcmp(size, "std") == 0), 00609 CPL_ERROR_ILLEGAL_INPUT, 00610 "Following output cube size specifications are available: " 00611 "'std' or 'max'"); 00612 00613 00614 KMO_TRY_ASSURE((strcmp(smethod, "none") == 0) || 00615 (strcmp(smethod, "header") == 0) || 00616 (strcmp(smethod, "center") == 0) || 00617 (strcmp(smethod, "user") == 0), 00618 CPL_ERROR_ILLEGAL_INPUT, 00619 "Following shift methods are available : 'none', " 00620 "'header', 'center' or 'user'"); 00621 00622 if (strcmp(smethod, "user") == 0) { 00623 filename = kmo_dfs_get_parameter_string(parlist, 00624 "kmos.kmo_multi_reconstruct.filename"); 00625 KMO_TRY_CHECK_ERROR_STATE(); 00626 00627 KMO_TRY_ASSURE(strcmp(filename, "") != 0, 00628 CPL_ERROR_ILLEGAL_INPUT, 00629 "path of file with shift information must be " 00630 "provided!"); 00631 00632 KMO_TRY_EXIT_IF_ERROR( 00633 kmo_dfs_print_parameter_help(parlist, 00634 "kmos.kmo_multi_reconstruct.filename")); 00635 } 00636 00637 KMO_TRY_EXIT_IF_ERROR( 00638 kmo_dfs_print_parameter_help(parlist, 00639 "kmos.kmo_multi_reconstruct.smethod")); 00640 00641 ifus_txt = kmo_dfs_get_parameter_string(parlist, 00642 "kmos.kmo_multi_reconstruct.ifus"); 00643 KMO_TRY_CHECK_ERROR_STATE(); 00644 00645 name = kmo_dfs_get_parameter_string(parlist, 00646 "kmos.kmo_multi_reconstruct.name"); 00647 KMO_TRY_CHECK_ERROR_STATE(); 00648 00649 if (strcmp(ifus_txt, "") != 0) { 00650 KMO_TRY_ASSURE(strcmp(name, "") == 0, 00651 CPL_ERROR_ILLEGAL_INPUT, 00652 "name parameter must be NULL if IFU indices are " 00653 "provided!"); 00654 00655 KMO_TRY_EXIT_IF_NULL( 00656 ifus = kmo_identify_values(ifus_txt)); 00657 00658 KMO_TRY_ASSURE(cpl_vector_get_size(ifus) == nr_exposures, 00659 CPL_ERROR_ILLEGAL_INPUT, 00660 "ifus parameter must have the same number of values " 00661 "than frames provided ) (%lld!=%d)", 00662 cpl_vector_get_size(ifus), nr_exposures); 00663 00664 for (int i = 0; i < nr_exposures; i++) { 00665 KMO_TRY_ASSURE((cpl_vector_get(ifus, i) > 0.5 && 00666 cpl_vector_get(ifus, i) < 24.5 ), 00667 CPL_ERROR_ILLEGAL_INPUT, 00668 "IFU numbers must be in the range 1..24"); 00669 } 00670 } 00671 00672 if (strcmp(name, "") != 0) { 00673 KMO_TRY_ASSURE(strcmp(ifus_txt, "") == 0, 00674 CPL_ERROR_ILLEGAL_INPUT, 00675 "ifus parameter must be NULL if name is provided!"); 00676 } 00677 00678 KMO_TRY_ASSURE((strcmp(name, "") != 0) || (strcmp(ifus_txt, "") != 0), 00679 CPL_ERROR_ILLEGAL_INPUT, 00680 "Either the name of the object or the numbers of the " 00681 "IFUs to combine must be provided (--name or --ifus " 00682 "parameters)"); 00683 00684 KMO_TRY_EXIT_IF_ERROR( 00685 kmo_dfs_print_parameter_help(parlist, 00686 "kmos.kmo_multi_reconstruct.ifus")); 00687 00688 KMO_TRY_EXIT_IF_ERROR( 00689 kmo_dfs_print_parameter_help(parlist, 00690 "kmos.kmo_multi_reconstruct.name")); 00691 00692 KMO_TRY_EXIT_IF_ERROR( 00693 kmo_combine_pars_load(parlist, 00694 "kmos.kmo_multi_reconstruct", 00695 &cmethod, 00696 &cpos_rej, 00697 &cneg_rej, 00698 &citer, 00699 &cmin, 00700 &cmax, 00701 FALSE)); 00702 00703 kmo_band_pars_load(parlist, "kmos.kmo_multi_reconstruct"); 00704 00705 cpl_msg_info("", "-------------------------------------------"); 00706 00707 // assure that filters and grating match for 00708 // XCAL, YCAL, LCAL and for data frames to reconstruct 00709 KMO_TRY_EXIT_IF_ERROR( 00710 kmo_check_frameset_setup(frameset, XCAL, 00711 TRUE, FALSE, FALSE)); 00712 KMO_TRY_EXIT_IF_ERROR( 00713 kmo_check_frameset_setup(frameset, YCAL, 00714 TRUE, FALSE, FALSE)); 00715 KMO_TRY_EXIT_IF_ERROR( 00716 kmo_check_frameset_setup(frameset, LCAL, 00717 TRUE, FALSE, FALSE)); 00718 KMO_TRY_EXIT_IF_ERROR( 00719 kmo_check_frame_setup(frameset, XCAL, YCAL, 00720 TRUE, FALSE, TRUE)); 00721 KMO_TRY_EXIT_IF_ERROR( 00722 kmo_check_frame_setup(frameset, XCAL, LCAL, 00723 TRUE, FALSE, TRUE)); 00724 if (nr_object_frames > 1) { 00725 KMO_TRY_EXIT_IF_ERROR( 00726 kmo_check_frameset_setup(frameset, OBJECT, 00727 TRUE, FALSE, FALSE)); 00728 KMO_TRY_EXIT_IF_ERROR( 00729 kmo_check_frame_setup(frameset, XCAL, OBJECT, 00730 TRUE, FALSE, TRUE)); 00731 } else { 00732 KMO_TRY_EXIT_IF_ERROR( 00733 kmo_check_frameset_setup(frameset, STD, 00734 TRUE, FALSE, FALSE)); 00735 KMO_TRY_EXIT_IF_ERROR( 00736 kmo_check_frame_setup(frameset, XCAL, STD, 00737 TRUE, FALSE, TRUE)); 00738 } 00739 00740 // KMO_TRY_EXIT_IF_ERROR( 00741 // kmo_check_cal_frames_rotangle(frameset, XCAL, YCAL)); 00742 // KMO_TRY_EXIT_IF_ERROR( 00743 // kmo_check_cal_frames_rotangle(frameset, XCAL, LCAL)); 00744 00745 00746 nr_alloc = nr_exposures; 00747 KMO_TRY_EXIT_IF_NULL( 00748 exposure_filename = cpl_malloc(nr_alloc * sizeof(char *))); 00749 KMO_TRY_EXIT_IF_NULL( 00750 exposure_objectname = cpl_malloc(nr_alloc * sizeof(char *))); 00751 KMO_TRY_EXIT_IF_NULL( 00752 exposure_ifus = cpl_malloc(nr_alloc * sizeof(int))); 00753 00754 // check exposure frames 00755 for (int i = 0; i < nr_exposures; i++) { 00756 KMO_TRY_EXIT_IF_NULL( 00757 tmp_str = cpl_sprintf("%d", i)); 00758 00759 KMO_TRY_EXIT_IF_NULL( 00760 frame = kmo_dfs_get_frame(exposures, tmp_str)); 00761 cpl_free(tmp_str); 00762 00763 KMO_TRY_EXIT_IF_NULL( 00764 exposure_filename[i] = (char*)cpl_frame_get_filename(frame)); 00765 00766 kmo_init_fits_desc(&desc); 00767 00768 desc = kmo_identify_fits_header(exposure_filename[i]); 00769 KMO_TRY_CHECK_ERROR_STATE_MSG("Provided fits file doesn't seem to " 00770 "be in KMOS-format!"); 00771 00772 KMO_TRY_ASSURE(((desc.nr_ext == KMOS_NR_DETECTORS) || 00773 ((desc.nr_ext == 2*KMOS_NR_DETECTORS))) && 00774 (desc.ex_badpix == FALSE) && 00775 ((desc.fits_type == raw_fits) || 00776 (desc.fits_type == f2d_fits)) && 00777 (desc.frame_type == detector_frame), 00778 CPL_ERROR_ILLEGAL_INPUT, 00779 "The frame to reconstruct isn't in the correct " 00780 "format!!!"); 00781 kmo_free_fits_desc(&desc); 00782 } 00783 00784 // select IFU for each exposure 00785 KMO_TRY_EXIT_IF_NULL( 00786 empty_frames = cpl_malloc(nr_alloc * sizeof(cpl_frame *))); 00787 int found=0; 00788 for (int i = 0; i < nr_exposures; i++) { 00789 empty_frames[i] = NULL; 00790 if (strcmp(ifus_txt, "") != 0) { //IFU selected by user given list 00791 found = 1; 00792 const char *tmpString; 00793 exposure_ifus[i] = (int) (cpl_vector_get(ifus, i) + 0.1); 00794 KMO_TRY_EXIT_IF_NULL( 00795 pl = kmclipm_propertylist_load(exposure_filename[i], 0)); 00796 KMO_TRY_EXIT_IF_NULL( 00797 tmp_ocs = cpl_sprintf("%s%d%s", IFU_NAME_PREFIX, 00798 exposure_ifus[i], IFU_NAME_POSTFIX)); 00799 if (cpl_propertylist_has(pl, tmp_ocs)) { 00800 tmpString = cpl_propertylist_get_string(pl, tmp_ocs); 00801 } else { 00802 tmpString = ""; 00803 } 00804 cpl_free(tmp_ocs); 00805 int len = strlen(tmpString); 00806 const int maxLen = 40; 00807 if (len > maxLen) { 00808 len = maxLen; 00809 } 00810 exposure_objectname[i] = (char *) cpl_malloc(len * sizeof(char)); 00811 strncpy(exposure_objectname[i], tmpString, len-1); 00812 if (len > 0) { 00813 (exposure_objectname[i])[len-1] = '\0'; 00814 } 00815 cpl_propertylist_delete(pl); pl = NULL; 00816 } else { //IFU selected by user given object name 00817 exposure_objectname[i] = (char*)name; 00818 KMO_TRY_EXIT_IF_NULL( 00819 tmp_str = cpl_sprintf("%d", i)); 00820 00821 KMO_TRY_EXIT_IF_NULL( 00822 frame = kmo_dfs_get_frame(exposures, tmp_str)); 00823 cpl_free(tmp_str); 00824 00825 KMO_TRY_CHECK_ERROR_STATE(); 00826 int this_ifu = kmo_get_index_from_ocs_name(frame, name); 00827 KMO_TRY_CHECK_ERROR_STATE(); 00828 if (this_ifu > 0) { 00829 found = 1; 00830 exposure_ifus[i] = this_ifu; 00831 } else { 00832 empty_frames[i] = frame; 00833 exposure_ifus[i] = -1; 00834 cpl_msg_warning("", 00835 "Could not find any IFU with an object " 00836 "named '%s' in file %s", 00837 name, exposure_filename[i]); 00838 } 00839 } 00840 KMO_TRY_CHECK_ERROR_STATE(); 00841 } 00842 if (! found) { 00843 cpl_msg_error("", 00844 "Could not find any IFU with an object named '%s' in " 00845 "any input file", name); 00846 KMO_TRY_EXIT_WITH_ERROR(CPL_ERROR_ILLEGAL_INPUT); 00847 } 00848 int j = 0; 00849 for (int i = 0; i < nr_alloc; i++) { 00850 if (empty_frames[i] != NULL) { 00851 KMO_TRY_EXIT_IF_ERROR( 00852 cpl_frameset_erase_frame(exposures, empty_frames[i])); 00853 nr_exposures--; 00854 exposure_ifus[j] = exposure_ifus[i]; 00855 } else { 00856 exposure_ifus[j] = exposure_ifus[i]; 00857 j++; 00858 } 00859 } 00860 for (int i = 0; i < nr_exposures; i++) { 00861 KMO_TRY_EXIT_IF_NULL( 00862 tmp_str = cpl_sprintf("%d", i)); 00863 00864 KMO_TRY_EXIT_IF_NULL( 00865 frame = kmo_dfs_get_frame(exposures, tmp_str)); 00866 cpl_free(tmp_str); 00867 00868 KMO_TRY_EXIT_IF_NULL( 00869 exposure_filename[i] = (char*)cpl_frame_get_filename(frame)); 00870 } 00871 00872 cpl_free(empty_frames); empty_frames = NULL; 00873 00874 // get reference header, subheader and set grid definition 00875 device_nr = ((exposure_ifus[0] -1) / KMOS_IFUS_PER_DETECTOR) + 1; 00876 00877 KMO_TRY_EXIT_IF_NULL( 00878 ref_main_header = kmclipm_propertylist_load(exposure_filename[0],0)); 00879 KMO_TRY_EXIT_IF_NULL( 00880 ref_frame = cpl_frameset_get_first(exposures)); 00881 KMO_TRY_EXIT_IF_NULL( 00882 ref_sub_header = kmclipm_propertylist_load(exposure_filename[0], 00883 device_nr)); 00884 KMO_TRY_EXIT_IF_ERROR( 00885 kmclipm_setup_grid(&gd, imethod, neighborhoodRange)); 00886 00887 exposure_rotangle = kmo_mr_get_rot_angle(kmo_dfs_get_frame(exposures, "0")); 00888 KMO_TRY_EXIT_IF_NULL( 00889 lcal_frame = kmo_mr_get_closest_cal_frame(frameset, LCAL, 00890 exposure_rotangle)); 00891 KMO_TRY_EXIT_IF_NULL( 00892 lcalImg = kmo_dfs_load_image_frame(lcal_frame, device_nr, 0, 00893 FALSE, NULL)); 00894 00895 KMO_TRY_EXIT_IF_NULL( 00896 tmp_header = kmclipm_propertylist_load( 00897 cpl_frame_get_filename(lcal_frame), 0)); 00898 KMO_TRY_EXIT_IF_NULL( 00899 keyword = cpl_sprintf("%s%d%s", IFU_FILTID_PREFIX, device_nr, 00900 IFU_FILTID_POSTFIX)); 00901 KMO_TRY_EXIT_IF_NULL( 00902 filter_id = cpl_propertylist_get_string(tmp_header, keyword)); 00903 00904 int band_method = 0; 00905 KMO_TRY_EXIT_IF_NULL( 00906 band_table = kmo_dfs_load_table(frameset, WAVE_BAND, 1, 0)); 00907 00908 KMO_TRY_EXIT_IF_ERROR( 00909 kmclipm_setup_grid_band_lcal(&gd, lcalImg, filter_id, 00910 band_method, band_table)); 00911 cpl_image_delete(lcalImg); lcalImg = NULL; 00912 cpl_propertylist_delete(tmp_header); tmp_header = NULL; 00913 cpl_free(keyword); keyword = NULL; 00914 cpl_table_delete(band_table); band_table = NULL; 00915 00916 //extract sub-headers for each exposures, calculate WCS 00917 KMO_TRY_EXIT_IF_NULL( 00918 header_data = cpl_malloc(nr_exposures*sizeof(cpl_propertylist*))); 00919 for (int i = 0; i < nr_exposures; i++) { 00920 device_nr = ((exposure_ifus[0] -1) / KMOS_IFUS_PER_DETECTOR) + 1; 00921 KMO_TRY_EXIT_IF_NULL( 00922 header_data[i] = kmclipm_propertylist_load(exposure_filename[i], 00923 device_nr)); 00924 KMO_TRY_EXIT_IF_ERROR( 00925 kmclipm_update_property_int(header_data[i],"NAXIS", 3,"")); 00926 KMO_TRY_EXIT_IF_ERROR( 00927 kmclipm_update_property_int(header_data[i],"NAXIS1",gd.x.dim,"")); 00928 KMO_TRY_EXIT_IF_ERROR( 00929 kmclipm_update_property_int(header_data[i],"NAXIS2",gd.y.dim,"")); 00930 KMO_TRY_EXIT_IF_ERROR( 00931 kmclipm_update_property_int(header_data[i],"NAXIS3",gd.l.dim,"")); 00932 cpl_propertylist *tmpHeader; 00933 KMO_TRY_EXIT_IF_NULL( 00934 tmpHeader = kmclipm_propertylist_load(exposure_filename[i],0)); 00935 KMO_TRY_EXIT_IF_ERROR( 00936 kmo_calc_wcs(tmpHeader, header_data[i], 00937 exposure_ifus[i], gd.l.start, gd.l.delta)); 00938 cpl_propertylist_delete(tmpHeader); 00939 } 00940 00941 // check rotation angle 00942 cd1_1 = kmo_dfs_get_property_double(header_data[0], CD1_1); 00943 cd1_2 = kmo_dfs_get_property_double(header_data[0], CD1_2); 00944 KMO_TRY_CHECK_ERROR_STATE(); 00945 ang1 = atan(cd1_2/cd1_1)*180/CPL_MATH_PI; 00946 for (int i = 1; i < nr_exposures; i++) { 00947 cd1_1 = kmo_dfs_get_property_double(header_data[i], CD1_1); 00948 cd1_2 = kmo_dfs_get_property_double(header_data[i], CD1_2); 00949 KMO_TRY_CHECK_ERROR_STATE(); 00950 ang2 = atan(cd1_2/cd1_1)*180/CPL_MATH_PI; 00951 00952 if (strcmp(smethod, "none") != 0) { 00953 // center, header, user 00954 KMO_TRY_ASSURE(fabs(ang1-ang2) <= 0.5, 00955 CPL_ERROR_ILLEGAL_INPUT, 00956 "Orientation of cube 1 (%gdeg) and cube %d " 00957 "(%gdeg) differ! " 00958 "Align the orientation of this cube with " 00959 "kmo_rotate before applying this recipe.", 00960 ang1, i+1, ang2); 00961 } else { 00962 // none 00963 if (fabs(ang1-ang2) > 0.5) { 00964 cpl_msg_warning("", 00965 "Orientation of cube 1 (%gdeg) and cube %d " 00966 "(%gdeg) differ! Processing anyway.", 00967 ang1, i+1, ang2); 00968 } 00969 } 00970 } 00971 00972 // set x/y shifts 00973 KMO_TRY_EXIT_IF_NULL( 00974 xshifts = cpl_malloc(nr_exposures * sizeof(double))); 00975 KMO_TRY_EXIT_IF_NULL( 00976 yshifts = cpl_malloc(nr_exposures * sizeof(double))); 00977 KMO_TRY_EXIT_IF_ERROR( 00978 kmo_mr_get_offsets(nr_exposures, smethod, imethod, neighborhoodRange, 00979 filename, frameset, exposures, exposure_ifus, 00980 (const cpl_propertylist**)header_data, 00981 fmethod, 00982 cmethod, 00983 cpos_rej, 00984 cneg_rej, 00985 citer, 00986 cmin, 00987 cmax, 00988 xshifts, yshifts)); 00989 00990 for (int i = 0; i < nr_exposures; i++) { 00991 printf("exposure %d: filename %s, selected IFU %d, object name " 00992 "\"%s\", xshift %f, yshift %f\n", i, exposure_filename[i], 00993 exposure_ifus[i], exposure_objectname[i], xshifts[i], yshifts[i]); 00994 } 00995 00996 // 00997 // set spatial part of the grid 00998 // 00999 // size = "max"; 01000 if (strcmp(size, "max") == 0) { 01001 double xmin=0, xmax=0, ymin=0, ymax=0; 01002 double gxshift, gyshift, gxdim, gydim; 01003 double pixel_resolution = KMOS_PIXEL_RESOLUTION; 01004 int xdim, ydim; 01005 01006 for (int i = 0; i < nr_exposures; i++) { 01007 if (xmin > xshifts[i]) { xmin = xshifts[i]; } 01008 if (xmax < xshifts[i]) { xmax = xshifts[i]; } 01009 if (ymin > yshifts[i]) { ymin = yshifts[i]; } 01010 if (ymax < yshifts[i]) { ymax = yshifts[i]; } 01011 } 01012 if (xmax > 0.0001) { 01013 gxshift = - ceil(xmax); 01014 } else { 01015 gxshift = 0.; 01016 } 01017 if (ymin < -0.0001) { 01018 gyshift = floor(ymin); 01019 } else { 01020 gyshift = 0.; 01021 } 01022 if (xmin < -0.0001) { 01023 gxdim = - floor(xmin); 01024 } else { 01025 gxdim = 0.; 01026 } 01027 if (ymax > 0.0001) { 01028 gydim = ceil(ymax); 01029 } else { 01030 gydim = 0.; 01031 } 01032 01033 xdim = (int) (gxdim - gxshift + .5); 01034 ydim = (int) (gydim - gyshift + .5); 01035 gd.x.start += gxshift * pixel_resolution; 01036 gd.y.start += gyshift * pixel_resolution; 01037 gd.x.dim += xdim; 01038 gd.y.dim += ydim; 01039 // printf("X: %f < %f Y: %f < %f \n",xmin,xmax,ymin,ymax); 01040 // printf("gxshift: %f gxdim: %f xdim: %d gyshift: %f gydim: %f ydim: %d \n", 01041 // gxshift, gxdim, xdim, gyshift, gydim, ydim); 01042 // printf("GD: %f %d %f %d\n", gd.x.start, gd.x.dim, gd.y.start, gd.y.dim); 01043 } 01044 01045 // 01046 // reconstruct multiple detector images 01047 // 01048 01049 // printf("GD: %f %f %d %f %f %d %f %f %d\n", 01050 // gd.x.start, gd.x.delta, gd.x.dim, 01051 // gd.y.start, gd.y.delta, gd.y.dim, 01052 // gd.l.start, gd.l.delta, gd.l.dim); 01053 01054 KMO_TRY_EXIT_IF_ERROR( 01055 kmo_priv_multi_reconstruct(frameset, 01056 exposures, 01057 exposure_ifus, 01058 xshifts, 01059 yshifts, 01060 gd, 01061 &cube_combined_data, 01062 &cube_combined_noise)); 01063 01064 // setup output category COMBINE + ESO PRO CATG 01065 if (strcmp(ifus_txt, "") != 0) { //IFU selected by user given list 01066 KMO_TRY_EXIT_IF_NULL( 01067 tmp_str = cpl_sprintf("IFU")); 01068 } else { 01069 KMO_TRY_EXIT_IF_NULL( 01070 tmp_str = cpl_sprintf("%s", name)); 01071 } 01072 01073 KMO_TRY_EXIT_IF_NULL( 01074 filename_output_cube = cpl_sprintf("%s_%s", CUBE_MULTI, tmp_str)); 01075 cpl_free(tmp_str); tmp_str = NULL; 01076 01077 KMO_TRY_EXIT_IF_ERROR( 01078 kmo_dfs_save_main_header(frameset, filename_output_cube, "", 01079 ref_frame, NULL, parlist, cpl_func)); 01080 // save output 01081 KMO_TRY_EXIT_IF_NULL( 01082 extname = kmo_extname_creator(ifu_frame, exposure_ifus[0], 01083 EXT_DATA)); 01084 01085 // calculate WCS 01086 KMO_TRY_EXIT_IF_ERROR( 01087 kmo_calc_wcs_gd(ref_main_header, ref_sub_header, exposure_ifus[0], gd)); 01088 01089 KMO_TRY_EXIT_IF_ERROR( 01090 kmclipm_update_property_string(ref_sub_header, 01091 EXTNAME, 01092 extname, 01093 "FITS extension name")); 01094 cpl_free(extname); extname = NULL; 01095 01096 KMO_TRY_EXIT_IF_ERROR( 01097 kmo_dfs_save_cube(cube_combined_data, filename_output_cube, 01098 "", ref_sub_header, 0./0.)); 01099 01100 if (cube_combined_noise != NULL) { 01101 KMO_TRY_EXIT_IF_NULL( 01102 extname = kmo_extname_creator(ifu_frame, exposure_ifus[0], 01103 EXT_NOISE)); 01104 01105 KMO_TRY_EXIT_IF_ERROR( 01106 kmclipm_update_property_string(ref_sub_header, 01107 EXTNAME, 01108 extname, 01109 "FITS extension name")); 01110 cpl_free(extname); extname = NULL; 01111 01112 KMO_TRY_EXIT_IF_ERROR( 01113 kmo_dfs_save_cube(cube_combined_noise, filename_output_cube, 01114 "", ref_sub_header, 0./0.)); 01115 } 01116 } 01117 KMO_CATCH 01118 { 01119 KMO_CATCH_MSG(); 01120 ret_val = -1; 01121 } 01122 01123 cpl_free(filename_output_cube); filename_output_cube = NULL; 01124 cpl_propertylist_delete(main_header); main_header = NULL; 01125 cpl_vector_delete(ifus); ifus = NULL; 01126 cpl_imagelist_delete(cube_combined_data); cube_combined_data = NULL; 01127 cpl_imagelist_delete(cube_combined_noise); cube_combined_noise = NULL; 01128 if (exposures != NULL) {cpl_frameset_delete(exposures);} 01129 if (exposure_filename != NULL) {cpl_free(exposure_filename);} 01130 if ((ifus_txt != NULL) && (strcmp(ifus_txt, "") != 0)) { //IFU selected by user given list 01131 for (int i = 0; i < nr_alloc; i++) { 01132 cpl_free(exposure_objectname[i]); 01133 } 01134 } 01135 if (exposure_objectname != NULL) {cpl_free(exposure_objectname);} 01136 if (exposure_ifus != NULL) {cpl_free(exposure_ifus);} 01137 if (ref_main_header != NULL) {cpl_propertylist_delete(ref_main_header);} 01138 if (ref_sub_header != NULL) {cpl_propertylist_delete(ref_sub_header);} 01139 if (xshifts != NULL) {cpl_free(xshifts);} 01140 if (yshifts != NULL) {cpl_free(yshifts);} 01141 01142 if (data_cube_list != NULL) { 01143 for (int i = 0; i < nr_exposures; i++) { 01144 cpl_imagelist_delete(data_cube_list[i]); data_cube_list[i] = NULL; 01145 } 01146 cpl_free(data_cube_list); data_cube_list = NULL; 01147 } 01148 01149 if (noise_cube_list != NULL) { 01150 for (int i = 0; i < nr_exposures; i++) { 01151 cpl_imagelist_delete(noise_cube_list[i]); noise_cube_list[i] = NULL; 01152 } 01153 cpl_free(noise_cube_list); noise_cube_list = NULL; 01154 } 01155 01156 if (data_header_list != NULL) { 01157 for (int i = 0; i < nr_exposures; i++) { 01158 cpl_propertylist_delete(data_header_list[i]); 01159 data_header_list[i] = NULL; 01160 } 01161 cpl_free(data_header_list); data_header_list = NULL; 01162 } 01163 01164 if (noise_header_list != NULL) { 01165 for (int i = 0; i < nr_exposures; i++) { 01166 cpl_propertylist_delete(noise_header_list[i]); 01167 noise_header_list[i] = NULL; 01168 } 01169 cpl_free(noise_header_list); noise_header_list = NULL; 01170 } 01171 01172 if (header_data != NULL) { 01173 for (int i = 0; i < nr_exposures; i++) { 01174 cpl_propertylist_delete(header_data[i]); 01175 header_data[i] = NULL; 01176 } 01177 cpl_free(header_data); header_data = NULL; 01178 } 01179 01180 return ret_val; 01181 } 01182
1.7.6.1